STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSTEL_0428Chemotaxis protein CheY. (263 aa)    
Predicted Functional Partners:
BSTEL_0403
Signal transduction histidine kinase.
 
   
 0.807
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.772
BSTEL_1099
Branched-chain amino acid ABC transporter substrate-binding protein.
  
   0.758
BSTEL_1756
Branched-chain amino acid transporter substrate-binding protein.
  
   0.758
BSTEL_1861
Branched-chain amino acid transporter substrate-binding protein.
  
   0.758
BSTEL_0430
PadR family transcriptional regulator.
       0.664
BSTEL_0431
NTP pyrophosphohydrolase.
       0.664
BSTEL_1455
ATPase.
  
     0.603
BSTEL_0432
Glycogen debranching protein GlgX; Belongs to the glycosyl hydrolase 13 family.
       0.596
BSTEL_0423
30S ribosomal protein S1.
  
    0.561
Your Current Organism:
Bifidobacterium stellenboschense
NCBI taxonomy Id: 762211
Other names: B. stellenboschense, Bifidobacterium sp. AFB23-3, Bifidobacterium stellenboschense Endo et al. 2012, DSM 23968, JCM 17298, strain AFB23-3
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