Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BSTEL_1069Hypothetical protein. (147 aa)    
Predicted Functional Partners:
BSTEL_1068
Hypothetical protein.
       0.773
BSTEL_1065
Hypothetical protein.
       0.598
BSTEL_1066
Hypothetical protein.
       0.598
BSTEL_1067
Hypothetical protein.
       0.598
BSTEL_1070
Type VII secretion protein EssC.
       0.495
BSTEL_1071
Hypothetical protein.
       0.495
Your Current Organism:
Bifidobacterium stellenboschense
NCBI taxonomy Id: 762211
Other names: B. stellenboschense, Bifidobacterium sp. AFB23-3, Bifidobacterium stellenboschense Endo et al. 2012, DSM 23968, JCM 17298, strain AFB23-3
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