Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
trxB1Thioredoxin-disulfide reductase 1. (321 aa)    
Predicted Functional Partners:
trx1
Thioredoxin 1; Belongs to the thioredoxin family.
 
 0.958
ADP13709.1
Pyridine nucleotide-disulfide oxidoreductase family protein 1.
  
  
0.923
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.910
megL1
Methionine gamma-lyase 1.
  
 
 0.910
megL2
Methionine gamma-lyase 2.
  
 
 0.910
trxB2
Thioredoxin-disulfide reductase 2.
  
  
 
0.901
ADP13468.1
Extra-cytoplasmic solute receptor family protein 2.
       0.777
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
 
  
 0.651
ADP13469.1
CoA-transferase family III family protein 1; Belongs to the CoA-transferase III family.
       0.650
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.629
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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