Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADP13767.1CobW/HypB/UreG, nucleotide-binding domain protein 1. (362 aa)    
Predicted Functional Partners:
ADP13766.1
Amidohydrolase family protein 4.
  
  
 0.783
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.674
dksA
RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.642
folE1
GTP cyclohydrolase 1; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.586
ADP19544.1
Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.583
ADP13765.1
Extra-cytoplasmic solute receptor family protein 6.
       0.556
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.528
ADP15206.1
Amino acid adenylation domain protein 1; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.503
ADP13768.1
Bacterial transcriptional regulator family protein 2.
       0.485
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.444
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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