STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cvaBColicin V processing peptidase. (723 aa)    
Predicted Functional Partners:
ADP13790.1
HlyD family secretion family protein 1.
 
 
 0.980
ADP15553.1
Type I secretion membrane fusion protein, HlyD family protein.
  
 
 0.782
ADP19174.1
Siderophore-interacting family protein.
   
 
 0.674
ADP18236.1
Hemolysin-type calcium-binding repeat family protein 4.
 
  
 0.659
ADP13861.1
Type I secretion outer membrane protein, TolC family protein 1.
  
  
 0.612
ADP18237.1
Type I secretion outer membrane protein, TolC family protein 3.
  
  
 0.612
ADP15549.1
Hemolysin-type calcium-binding repeat family protein 1.
  
  
 0.571
ADP16812.1
HlyD family secretion family protein 2.
  
 
 0.527
ADP18960.1
HlyD family secretion family protein 5.
  
 
 0.527
ADP15439.1
Multidrug resistance protein A.
  
 
 0.521
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.