ADP14130.1 protein (Achromobacter xylosoxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ADP14130.1

ABC transporter ATP-binding protein uup. (608 aa)

Predicted Functional Partners:

rplU

0.711

rplD

0.706

rpsO

0.699

rpmH

0.698

rpsC

0.697

rpsG

0.687

rpmD

0.684

rplC

0.684

rpsD

0.682

rpmA

0.678

Your Current Organism:

Achromobacter xylosoxidans

NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADP14130.1	rplC	AXYL_00780	AXYL_06457	ABC transporter ATP-binding protein uup.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.684
ADP14130.1	rplD	AXYL_00780	AXYL_06456	ABC transporter ATP-binding protein uup.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.706
ADP14130.1	rplU	AXYL_00780	AXYL_06052	ABC transporter ATP-binding protein uup.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.711
ADP14130.1	rpmA	AXYL_00780	AXYL_06053	ABC transporter ATP-binding protein uup.	Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.678
ADP14130.1	rpmD	AXYL_00780	AXYL_06429	ABC transporter ATP-binding protein uup.	Ribosomal protein L30.	0.684
ADP14130.1	rpmH	AXYL_00780	AXYL_06532	ABC transporter ATP-binding protein uup.	Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.698
ADP14130.1	rpsC	AXYL_00780	AXYL_06451	ABC transporter ATP-binding protein uup.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.697
ADP14130.1	rpsD	AXYL_00780	AXYL_06422	ABC transporter ATP-binding protein uup.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.682
ADP14130.1	rpsG	AXYL_00780	AXYL_06461	ABC transporter ATP-binding protein uup.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.687
ADP14130.1	rpsO	AXYL_00780	AXYL_01243	ABC transporter ATP-binding protein uup.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.699
rplC	ADP14130.1	AXYL_06457	AXYL_00780	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ABC transporter ATP-binding protein uup.	0.684
rplC	rplD	AXYL_06457	AXYL_06456	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplU	AXYL_06457	AXYL_06052	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplC	rpmA	AXYL_06457	AXYL_06053	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.994
rplC	rpmD	AXYL_06457	AXYL_06429	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L30.	0.995
rplC	rpmH	AXYL_06457	AXYL_06532	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.931
rplC	rpsC	AXYL_06457	AXYL_06451	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsD	AXYL_06457	AXYL_06422	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.994
rplC	rpsG	AXYL_06457	AXYL_06461	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.995
rplC	rpsO	AXYL_06457	AXYL_01243	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.993

page 1 of 6

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About