Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
garL12-dehydro-3-deoxyglucarate aldolase 1; Belongs to the HpcH/HpaI aldolase family. (264 aa)    
Predicted Functional Partners:
garL2
2-dehydro-3-deoxyglucarate aldolase 2; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.911
kdgD
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
    
  0.903
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
 0.854
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.720
ADP18189.1
Hydratase/decarboxylase family protein 2.
 
  
 0.679
ADP14869.1
D-galactarate dehydratase/altronate hydrolase family protein 3.
 
 
 0.675
ADP18847.1
D-galactarate dehydratase/altronate hydrolase family protein 4.
 
 
 0.675
ADP17981.1
NAD binding domain of 6-phosphogluconate dehydrogenase family protein 6.
  
 
 0.654
ADP14203.1
Aminotransferase class-V family protein 2.
       0.639
ADP13831.1
D-galactarate dehydratase/altronate hydrolase family protein 1.
  
 
 0.623
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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