STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP14203.1Aminotransferase class-V family protein 2. (400 aa)    
Predicted Functional Partners:
lysC
Aspartate kinase; Belongs to the aspartokinase family.
 
 0.695
argE1
Acetylornithine deacetylase 1.
     
 0.672
garL1
2-dehydro-3-deoxyglucarate aldolase 1; Belongs to the HpcH/HpaI aldolase family.
       0.639
ADP14205.1
Sugar transporter family protein 3.
  
  
 0.556
ADP13567.1
Ferredoxin-dependent glutamate synthase.
  
  
 0.528
ADP13828.1
malate/L-lactate dehydrogenase family protein 1; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.520
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
  
 0.458
lysA2
Diaminopimelate decarboxylase 2; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.452
ADP14201.1
Bacterial regulatory helix-turn-helix protein, AsnC family protein 5.
     
 0.451
lysA1
Diaminopimelate decarboxylase 1; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.445
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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