Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP14401.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
ADP14403.1
Single-strand binding family protein.
 
   
 0.919
topB1
DNA topoisomerase III 1.
 
   
 0.888
ADP14400.1
Hypothetical protein.
 
   
 0.883
ADP14398.1
Hypothetical protein.
 
   
 0.878
ADP14399.1
Hypothetical protein.
 
     0.878
ADP14396.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein 1.
 
     0.874
ADP14395.1
Prophage CP4-57 regulatory protein AlpA.
 
     0.844
ADP14402.1
Hypothetical protein.
       0.841
ADP14450.1
Type IV secretory pathway, VirB4 component.
  
    0.791
pilL
PilL protein.
 
     0.787
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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