Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP14794.1Bacterial regulatory protein, TetR family protein 5. (188 aa)    
Predicted Functional Partners:
ADP14793.1
Thioesterase superfamily protein 4.
     
 0.786
ADP14792.1
Hypothetical protein.
       0.784
ADP15175.1
Hypothetical protein.
  
    0.522
dltD
Poly(glycerophosphate chain) D-alanine transfer protein.
  
     0.510
ADP15480.1
Lipoprotein 1.
  
   
 0.412
ADP13654.1
Putative membrane protein 4.
  
     0.405
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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