Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP14836.1ATP-binding protein BioM. (225 aa)    
Predicted Functional Partners:
ADP14837.1
Cobalt transport family protein.
 
 0.999
ADP14838.1
Transmembranal protein BioY.
 
 
 0.997
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.666
ADP16395.1
ABC transporter family protein 45.
  
     0.618
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
    0.595
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.574
msrB1
methionine-R-sulfoxide reductase 1; Belongs to the MsrB Met sulfoxide reductase family.
       0.574
ADP16805.1
ABC transporter family protein 58; Belongs to the ABC transporter superfamily.
  
  
 
0.572
ADP16804.1
ABC transporter family protein 57; Belongs to the ABC transporter superfamily.
  
  
 
0.570
ugpC1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC 1; Belongs to the ABC transporter superfamily.
  
  
 
0.561
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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