STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP14890.1Anti sigma-E protein RseA, N-terminal domain protein. (169 aa)    
Predicted Functional Partners:
ADP14891.1
sigma-E factor regulatory protein.
 
 
 0.998
mucD1
Serine protease MucD 1; Belongs to the peptidase S1C family.
  
 
 0.938
rpoE
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.887
ADP13537.1
Peptidase S1 and S6, chymotrypsin/Hap.
  
 
 0.808
mucD2
Serine protease MucD 2; Belongs to the peptidase S1C family.
  
 
 0.805
ADP14888.1
Hypothetical protein.
     
 0.801
ADP15239.1
Hypothetical protein.
 
    0.767
ADP18425.1
Barstar family protein 2.
  
     0.766
ADP18884.1
CAAX amino terminal protease family protein 2.
  
     0.752
ADP14146.1
Hypothetical protein.
  
     0.740
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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