Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dppB2Dipeptide transport system permease protein DppB 2. (306 aa)    
Predicted Functional Partners:
gsiD1
Glutathione transport system permease protein GsiD 1.
 
 0.997
ADP14939.1
Glutathione-binding protein GsiB.
 
 0.992
gsiA1
Glutathione import ATP-binding protein GsiA 1; Belongs to the ABC transporter superfamily.
 
 0.975
gsiD2
Glutathione transport system permease protein GsiD 2.
 
 
 0.880
ADP14552.1
Binding-protein-dependent transport system inner membrane component family protein 10.
 
 
 0.878
ADP14647.1
Binding-protein-dependent transport system inner membrane component family protein 14.
 
 
 0.877
ADP17588.1
Oligopeptide transport system permease protein APPC.
 
 
 0.876
ADP14726.1
Binding-protein-dependent transport system inner membrane component family protein 18.
 
 
 0.875
ADP18928.1
Binding-protein-dependent transport system inner membrane component family protein 64.
 
 
 0.875
dppC5
Dipeptide transport system permease protein DppC 5.
 
 
 0.871
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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