STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phaRPolyhydroxyalkanoate synthesis repressor PhaR. (188 aa)    
Predicted Functional Partners:
phaC
Poly-beta-hydroxybutyrate polymerase.
 
   
 0.914
phaZ
Polyhydroxyalkanoate depolymerase, intracellular.
 
   
 0.853
phbB3
acetoacetyl-CoA reductase 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.839
ADP14369.1
Phasin family domain protein.
 
   
 0.707
dctS
C4-dicarboxylate transport sensor protein DctS.
  
     0.508
ADP15006.1
Linear amide C-N hydrolase, choloylglycine hydrolase family protein.
       0.481
phbB2
acetoacetyl-CoA reductase 2.
 
   
 0.461
ADP18416.1
Hypothetical protein.
 
   
 0.418
ADP15007.1
Fe2+ transport protein.
 
     0.414
ADP18437.1
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
      
 0.413
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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