Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP15118.1HAMP domain protein 6. (442 aa)    
Predicted Functional Partners:
qseB1
Transcriptional regulatory protein QseB 1.
 
 
 0.966
tctD3
Transcriptional regulatory protein TctD 3.
 
 
 0.856
qseB3
Transcriptional regulatory protein QseB 3.
 
 
 0.856
tctD2
Transcriptional regulatory protein TctD 2.
 
 
 0.854
ADP15293.1
Response regulator 3.
 
 
 0.852
qseB2
Transcriptional regulatory protein QseB 2.
 
 
 0.850
ADP13976.1
Response regulator 1.
 
 
 0.848
tctD4
Transcriptional regulatory protein TctD 4.
 
 
 0.844
tctD1
Transcriptional regulatory protein TctD 1.
 
 
 0.842
ADP16230.1
Transcriptional regulatory protein ResD.
 
 
 0.841
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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