Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP15411.1Hypothetical protein. (233 aa)    
Predicted Functional Partners:
ADP15415.1
Hypothetical protein.
  
  
 0.942
ADP18718.1
Phage tail sheath family protein.
  
 
 0.931
ADP15413.1
Hypothetical protein.
   
   0.822
ADP15410.1
Hypothetical protein.
       0.805
ADP15412.1
Hypothetical protein.
       0.805
ADP15408.1
Hypothetical protein.
       0.795
ADP15407.1
Tape measure domain protein.
       0.787
ADP15409.1
Hypothetical protein.
       0.786
ADP15414.1
Hypothetical protein.
  
  
 0.766
ADP15400.1
Hypothetical protein.
  
  
 0.674
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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