Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADP15622.1Bacterial regulatory protein, RpiR family protein 1. (287 aa)    
Predicted Functional Partners:
ADP15466.1
Helix-turn-helix domain, RpiR family protein 4.
 
   
 0.767
ADP15621.1
Extra-cytoplasmic solute receptor family protein 42.
       0.551
ADP15620.1
Succinylglutamate desuccinylase/aspartoacylase family protein 4.
       0.544
iaaA
Isoaspartyl peptidase.
  
    0.541
ADP15623.1
Hypothetical protein.
       0.457
ADP14837.1
Cobalt transport family protein.
 
    0.442
ADP13781.1
Tat pathway signal sequence domain protein 2.
 
  
 0.406
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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