STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
metR2HTH-type transcriptional regulator MetR 2; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
ADP15870.1
Superfamily I DNA and RNA helicases and helicase subunits-like protein.
       0.773
ADP15871.1
Hypothetical protein.
       0.773
ADP15872.1
Hypothetical protein.
       0.773
ADP15873.1
Hypothetical protein.
       0.773
metE2
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 2.
 
   
 0.655
metE1
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
 
   
 0.562
ADP15868.1
Hypothetical protein.
 
     0.554
ADP15874.1
NADH:flavin oxidoreductase/NADH oxidase family protein 1.
     
 0.458
ADP15875.1
Endoribonuclease L-PSP family protein 8.
       0.454
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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