STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alcBAlcaligin biosynthesis protein. (201 aa)    
Predicted Functional Partners:
ADP16388.1
LucA/LucC family protein.
  
 0.999
alcA
Alcaligin biosynthesis enzyme.
 
  
 0.966
ADP16387.1
Hypothetical protein.
 
     0.912
ADP15920.1
L-ornithine 5-monooxygenase.
 
  
 0.777
ADP16386.1
Rieske [2Fe-2S] domain protein 6.
     
 0.713
ADP16385.1
Bacterial regulatory helix-turn-helix protein, AraC family protein 16.
 
  
 0.583
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.466
ADP16391.1
Bacterial regulatory helix-turn-helix protein, LysR family protein 91; Belongs to the LysR transcriptional regulatory family.
       0.418
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.