Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADP16542.1Alpha-2 type XI collagen. (166 aa)    
Predicted Functional Partners:
ADP16543.1
Hypothetical protein.
 
  
 0.962
ADP16539.1
Hypothetical protein.
 
   
 0.955
ADP16540.1
Tetratricopeptide repeat family protein 8.
 
   
 0.954
ADP16541.1
Von Willebrand factor type A domain protein 2.
 
    0.952
ADP16538.1
Nonspecific acid phosphatase.
 
     0.942
ADP16544.1
ATPase family associated with various cellular activities (AAA) family protein 2.
 
  
 0.927
ADP16537.1
Sulfatase family protein 6.
 
     0.905
ADP16546.1
Protein involved in meta-pathway of phenol degradation 1.
 
     0.806
ADP16545.1
Hypothetical protein.
 
     0.773
ADP16536.1
Spermine synthase.
 
     0.657
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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