Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP16835.1Hypothetical protein. (70 aa)    
Predicted Functional Partners:
ADP16834.1
Fusaric acid resistance protein family protein 1.
 
   
 0.965
ADP16836.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.908
ADP16833.1
Bacterial regulatory helix-turn-helix protein, MarR family protein 11.
 
     0.907
ADP16837.1
Efflux transporter, outer membrane factor lipoprotein, NodT family protein 6.
 
     0.745
ADP19814.1
ABC-type transporter, periplasmic component 5.
  
     0.504
ADP16978.1
Outer membrane autotransporter barrel domain protein 5.
  
     0.492
ADP18746.1
Extracellular solute-binding protein, family 1 protein.
  
     0.479
queD
Queuosine biosynthesis protein QueD.
       0.469
ADP15351.1
Hypothetical protein.
  
     0.467
ADP17923.1
Putative lipoprotein 14.
  
     0.457
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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