Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP16894.1Beta-lactamase family protein 3. (350 aa)    
Predicted Functional Partners:
ADP16895.1
Serine--glyoxylate aminotransferase.
       0.708
ADP16426.1
Putative membrane protein 36.
  
   
 0.599
ADP13512.1
Amidohydrolase family protein 3.
  
    0.487
ADP14729.1
MlrC family protein 3; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
   
 0.479
ADP16896.1
Bacterial regulatory protein, GntR family protein 39.
       0.452
ADP15706.1
Aspartate racemase family protein 1; Belongs to the aspartate/glutamate racemases family.
 
  
 0.410
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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