Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hpaRHomoprotocatechuate degradation operon regulator, HpaR. (154 aa)    
Predicted Functional Partners:
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
   
 0.780
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
   
 0.654
ADP17488.1
Hypothetical protein.
       0.543
hpaI
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.491
ADP15962.1
Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein 2.
 
   
 0.428
ADP14310.1
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein 3.
  
  
 0.404
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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