Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP17638.1HlyD family secretion family protein 3. (369 aa)    
Predicted Functional Partners:
ADP17637.1
Membrane protein 6.
 
     0.945
ADP17639.1
Efflux transporter, outer membrane factor lipoprotein, NodT family protein 7.
 
 
 0.934
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.780
ADP17636.1
Putative membrane protein 56.
       0.756
ADP15554.1
Type I secretion system ATPase family protein.
 
 
 0.602
ADP13793.1
Prolyl oligopeptidase family protein 1.
  
     0.579
ADP18646.1
Major facilitator superfamily protein 49.
 
 
 0.569
ADP17992.1
Cobalt-zinc-cadmium resistance protein CzcC.
 
 
 0.565
ADP17640.1
Polyphosphate kinase 2 domain protein.
 
   
 0.564
ADP13915.1
Multidrug efflux system lipoprotein 1.
 
 
 0.553
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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