STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP17648.1IclR helix-turn-helix domain protein 1. (202 aa)    
Predicted Functional Partners:
uca
Urea carboxylase.
  
    0.714
ADP19246.1
Pca regulon regulatory protein 2.
  
     0.652
ADP17649.1
Extra-cytoplasmic solute receptor family protein 107.
 
     0.593
tauD1
Alpha-ketoglutarate-dependent taurine dioxygenase 1.
       0.508
ADP16430.1
Dioxygenase family protein 1.
  
   
 0.501
ADP15132.1
Catechol 1,2-dioxygenase.
 
  
 0.491
ADP18359.1
Bacterial transcriptional regulator family protein 29.
  
     0.486
ADP15031.1
Bacterial transcriptional regulator family protein 10.
  
     0.467
ADP19380.1
Bacterial transcriptional regulator family protein 36.
  
     0.467
ADP15660.1
Bacterial transcriptional regulator family protein 13.
  
     0.465
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.