STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP17761.1Sigma-54 interaction domain protein 2. (464 aa)    
Predicted Functional Partners:
rpoN1
RNA polymerase sigma-54 factor 1; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.803
rpoN2
RNA polymerase sigma-54 factor 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.801
ADP17762.1
Hypothetical protein.
 
     0.764
ADP17773.1
Type IV leader peptidase family protein 1.
  
  
 0.728
cpaE
Pilus assembly protein CpaE.
 
    0.707
ADP17764.1
Tetratricopeptide repeat family protein 9.
 
    0.679
ADP17766.1
Bacterial type II secretion system protein F domain protein 4.
 
    0.671
ADP17769.1
Bacterial type II and III secretion system family protein 2; Belongs to the bacterial secretin family.
 
    0.645
ADP17760.1
Hypothetical protein.
  
    0.616
ADP17771.1
TadE-like family protein 3.
 
  
 0.616
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.