STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
cobBSIR2 family protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. (272 aa)    
Predicted Functional Partners:
ADP13419.1
SET domain protein.
  
 
 0.823
recQ
ATP-dependent DNA helicase RecQ.
  
 
 0.741
ADP15066.1
Histone deacetylase domain protein 1.
    
 0.694
ADP16424.1
Histone deacetylase domain protein 2.
    
 0.694
ADP18656.1
Acetylpolyamine aminohydrolase.
    
 0.694
ADP18882.1
Variant SH3 domain protein.
  
 0.683
paaX
Phenylacetic acid degradation operon negative regulatory protein PaaX.
   
    0.655
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.649
icd1
Isocitrate dehydrogenase, NADP-dependent 1.
    
 0.609
ADP16329.1
Appr-1-p processing domain protein.
 
 0.595
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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