STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
suhB2Inositol-1-monophosphatase 2. (261 aa)    
Predicted Functional Partners:
suhB1
Inositol-1-monophosphatase 1.
  
  
 
0.913
plcN1
Phospholipase C, phosphocholine-specific 1.
     
  0.900
plcN2
Phospholipase C, phosphocholine-specific 2.
     
  0.900
plcN3
Phospholipase C, phosphocholine-specific 3.
     
  0.900
plcN4
Phospholipase C, phosphocholine-specific 4.
     
  0.900
trmJ
RNA methyltransferase, TrmH family, group 1 family protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
 
    0.749
hisB
Imidazoleglycerol-phosphate dehydratase.
  
  
 0.580
nusA
Transcription elongation protein NusA; Participates in both transcription termination and antitermination.
  
   0.550
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
    0.517
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
   0.494
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.