Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADP17933.1TRAP transporter, DctM subunit 10. (426 aa)    
Predicted Functional Partners:
ADP17931.1
Bacterial extracellular solute-binding protein, family 7 family protein 4.
 
  
 0.957
ADP17932.1
Tripartite ATP-independent periplasmic transporter, DctQ component family protein 11.
 
 
 0.888
ADP17629.1
Tripartite ATP-independent periplasmic transporter, DctQ component family protein 10.
 
 
 0.861
ADP15316.1
TRAP transporter solute receptor, DctP family protein 1.
 
  
 0.819
ADP15355.1
TRAP transporter solute receptor, DctP family protein 2.
 
  
 0.819
ADP15570.1
TRAP transporter solute receptor, DctP family protein 3.
 
  
 0.819
ADP16416.1
TRAP transporter solute receptor, DctP family protein 4.
 
  
 0.819
ADP17630.1
TRAP transporter solute receptor, DctP family protein 7.
 
  
 0.819
ADP17186.1
TRAP transporter solute receptor, DctP family protein 6.
 
  
 0.815
ADP18852.1
TRAP transporter solute receptor, DctP family protein 8.
 
  
 0.815
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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