STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pecSHTH-type transcriptional regulator PecS. (170 aa)    
Predicted Functional Partners:
ADP18129.1
Major facilitator superfamily protein 44.
     
 0.645
ADP18967.1
EamA-like transporter family protein 2.
 
  
 0.565
ADP18127.1
Histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
  
 0.527
holA
DNA polymerase III, delta subunit.
   
   0.481
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.469
lptE
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
       0.457
ADP13931.1
Bacterial regulatory helix-turn-helix protein, MarR family protein 1.
  
     0.420
ADP15689.1
Bacterial regulatory helix-turn-helix protein, AraC family protein 12.
 
  
 0.414
ADP15707.1
Bacterial regulatory helix-turn-helix protein, MarR family protein 6.
  
     0.401
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.