Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP18269.1Bacterial regulatory protein, GntR family protein 54. (261 aa)    
Predicted Functional Partners:
ADP13778.1
Bacterial regulatory protein, GntR family protein 4.
  
   
 0.760
ADP18514.1
Bacterial regulatory protein, GntR family protein 55.
  
   
 0.758
ADP18687.1
Bacterial regulatory protein, GntR family protein 58.
  
   
 0.757
ADP17831.1
Bacterial regulatory protein, GntR family protein 49.
  
   
 0.730
ADP13643.1
Hypothetical protein.
  
  
 0.728
ADP14966.1
Bacterial regulatory protein, GntR family protein 17.
  
     0.720
ADP13833.1
Bacterial regulatory protein, GntR family protein 6.
  
     0.708
phnF
Phosphonates metabolism transcriptional regulator PhnF.
  
   
 0.704
ADP18268.1
Citrate lyase beta subunit-like protein; Belongs to the HpcH/HpaI aldolase family.
 
     0.627
hutC
Histidine utilization repressor.
  
     0.594
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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