Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADP18392.1Hypothetical protein. (170 aa)    
Predicted Functional Partners:
ADP18391.1
Extra-cytoplasmic solute receptor family protein 139.
       0.784
ADP18390.1
Gamma-glutamyltranspeptidase family protein 4.
 
     0.673
ADP16555.1
Hypothetical protein.
  
     0.576
ADP16426.1
Putative membrane protein 36.
  
     0.570
ADP17690.1
Hypothetical protein.
  
     0.539
ADP19170.1
KWG Leptospira family protein 1.
  
   
 0.524
ADP17923.1
Putative lipoprotein 14.
  
     0.488
ADP17844.1
Helix-turn-helix family protein 8.
  
     0.486
ADP19171.1
KWG Leptospira family protein 2.
  
   
 0.486
ADP16100.1
YcgR family protein.
  
   
 0.469
Your Current Organism:
Achromobacter xylosoxidans
NCBI taxonomy Id: 762376
Other names: A. xylosoxidans A8, Achromobacter xylosoxidans A8, Achromobacter xylosoxidans str. A8, Achromobacter xylosoxidans strain A8
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