Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OEH83082.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
OEH83081.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.995
OEH81386.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.989
OEH83123.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.959
OEH83303.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.934
OEH84001.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.758
OEH81388.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.714
OEH83125.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.675
OEH83178.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.657
OEH83262.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
0.637
OEH83941.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.622
Your Current Organism:
Enterococcus rivorum
NCBI taxonomy Id: 762845
Other names: CCM 7986, E. rivorum, Enterococcus rivorum Niemi et al. 2012, Enterococcus sp. HAMBI 3055, Enterococcus sp. HAMBI 3119, Enterococcus sp. HAMBI 3120, Enterococcus sp. HAMBI 3121, Enterococcus sp. HAMBI 3122, Enterococcus sp. HAMBI 3124, HAMBI 3055, LMG 25899, LMG:25899, VYH 91390, strain S299
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