STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY50690.1OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR 006665; KEGG: phe:Phep_0109 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family. (141 aa)    
Predicted Functional Partners:
ADY53152.1
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: phe:Phep_0325 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family.
 
 
 0.822
ADY53436.1
Heat shock protein Hsp90; COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR001404: IPR 003594: IPR 020576: IPR 020575; KEGG: phe:Phep_0051 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SPTR: Heat shock protein Hsp90; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein.
  
 0.804
ADY53076.1
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: phe:Phep_3481 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: Putative flagellar motor protein MotB; PFAM: OmpA family.
 
 
 0.802
ADY50689.1
COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: bvu:BVU_1162 glycoside hydrolase family beta-glycosidase; PFAM: glycoside hydrolase family 3 domain protein; PRIAM: Beta-glucosidase; SPTR: Beta-glucosidase; PFAM: Glycosyl hydrolase family 3 N terminal domain.
  
    0.774
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.766
ADY52280.1
WD-40 repeat-containing protein; COGs: COG2319 FOG: WD40 repeat; InterPro IPR020472: IPR 019781: IPR 019775: IPR 001680: IPR 019782: IPR 017986; KEGG: phe:Phep_3199 WD-40 repeat protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: WD-40 repeat protein; PFAM: WD domain, G-beta repeat.
  
 0.759
ADY50691.1
Ankyrin; COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110: IPR 020683; KEGG: dfe:Dfer_4030 ankyrin; SMART: Ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat.
  
 0.723
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.687
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.681
ADY52268.1
Heat shock protein 70; COGs: COG0443 Molecular chaperone; InterPro IPR001023: IPR 013126: IPR 018181; KEGG: phe:Phep_3231 Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; SPTR: Heat shock protein 70; PFAM: Hsp70 protein; TIGRFAM: Fe-S protein assembly chaperone HscA.
  
 0.662
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.