STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY50693.1KEGG: pmr:PMI1529 hypothetical protein; SPTR: Putative uncharacterized protein. (161 aa)    
Predicted Functional Partners:
ADY50694.1
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR 020449: IPR 000005; KEGG: cpi:Cpin_7131 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.520
ADY50695.1
Hypothetical protein; KEGG: str:Sterm_2670 carbamoyl-phosphate synthase, small subunit; manually curated.
       0.520
ADY50691.1
Ankyrin; COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110: IPR 020683; KEGG: dfe:Dfer_4030 ankyrin; SMART: Ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat.
       0.486
ADY50692.1
Amidohydrolase 3; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR013108; KEGG: cpi:Cpin_7130 putative deaminase; PFAM: Amidohydrolase 3; SPTR: Deaminase.
       0.486
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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