STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY50751.1COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR006055: IPR 003141: IPR 013520: IPR 004013: IPR 011708: IPR 004365: IPR 004805: IPR 001345; KEGG: fjo:Fjoh_1310 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; Exonuclease RNase T and DNA polymerase III; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; Exonuclease; SPTR: DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; Exonuclease; TIGRFAM: DNA-directed [...] (1454 aa)    
Predicted Functional Partners:
ADY52062.1
COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372: IPR 005790; KEGG: phe:Phep_1251 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; SPTR: Putative uncharacterized protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
  
 0.996
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
 0.996
ADY54303.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 0.996
ADY53624.1
COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: phe:Phep_0075 DNA polymerase III gamma/tau subunit; SPTR: DNA polymerase III gamma/tau subunit.
  
 0.995
ADY51753.1
COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR000305: IPR 006054: IPR 006055: IPR 013520; KEGG: fjo:Fjoh_1965 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family.
 
 0.971
ADY51642.1
InterPro IPR006055: IPR 013520; KEGG: gfo:GFO_3028 DNA polymerase III subunit alpha-1; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III alpha subunit; PFAM: Exonuclease.
  
0.953
ADY51776.1
COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055: IPR 013520; KEGG: phe:Phep_1888 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: Exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease.
   
 0.949
ADY53629.1
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424; KEGG: gfo:GFO_1227 single-stranded DNA-binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
  
 
 0.919
ADY53665.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.919
ADY53651.1
KEGG: phe:Phep_0197 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3127).
  
 
 0.893
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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