STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bshCProtein of unknown function UCP012535; COGs: COG4365 conserved hypothetical protein; InterPro IPR011199; KEGG: phe:Phep_3526 hypothetical protein; PFAM: protein of unknown function UCP012535; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317); Belongs to the BshC family. (526 aa)    
Predicted Functional Partners:
ADY52570.1
LmbE family protein; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: phe:Phep_1208 LmbE family protein; PFAM: LmbE family protein; SPTR: LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase.
 
  
 0.894
ADY50845.1
COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: phe:Phep_3527 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; SPTR: Probable malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.795
ADY54121.1
InterPro IPR009474; KEGG: phe:Phep_3669 protein of unknown function DUF1094; PFAM: protein of unknown function DUF1094; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1094); Belongs to the UPF0403 family.
  
   
 0.793
ADY53988.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: phe:Phep_0496 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
   
 0.779
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.746
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.713
ADY52837.1
KEGG: phe:Phep_0743 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.689
ADY52264.1
InterPro IPR019854; KEGG: phe:Phep_3226 hypothetical protein; SPTR: Gliding protein GldC; TIGRFAM: gliding motility-associated protein GldC; TIGRFAM: gliding motility-associated protein GldC.
  
     0.649
ADY53755.1
Protein of unknown function DUF2480; InterPro IPR018914; KEGG: phe:Phep_4025 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2480).
  
     0.634
ADY53228.1
KEGG: phe:Phep_1275 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911).
  
     0.587
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
Server load: high (88%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.