STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY50878.1KEGG: fjo:Fjoh_0813 hypothetical protein; SPTR: Putative uncharacterized protein. (137 aa)    
Predicted Functional Partners:
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.822
ADY50879.1
L-fucose transporter; COGs: COG0738 Fucose permease; InterPro IPR011701: IPR 005275: IPR 005964; KEGG: fjo:Fjoh_4128 L-fucose transporter; PFAM: major facilitator superfamily MFS_1; SPTR: L-fucose transporter; TIGRFAM: L-fucose transporter; glucose/galactose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; L-fucose:H+ symporter permease.
       0.503
ADY53017.1
COGs: COG2910 Putative NADH-flavin reductase; InterPro IPR000846; KEGG: fjo:Fjoh_5020 NAD-dependent epimerase/dehydratase; PFAM: dihydrodipicolinate reductase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NmrA-like family.
  
  
 0.488
ADY50784.1
COGs: COG3871 Uncharacterized stress protein (general stress protein 26); KEGG: cpi:Cpin_6715 pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: General stress protein; PFAM: Pyridoxamine 5'-phosphate oxidase.
   
    0.463
ADY51214.1
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060: IPR 018062: IPR 013096: IPR 000005; KEGG: cpi:Cpin_3596 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
  
    0.410
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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