STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY51010.1RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284; KEGG: phe:Phep_3304 RNA polymerase sigma factor, sigma-70 family; SPTR: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)    
Predicted Functional Partners:
ADY51011.1
KEGG: phe:Phep_3303 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.962
ADY51008.1
Hypothetical protein; InterPro IPR000601; KEGG: phe:Phep_3306 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PKD domain; TIGRFAM: conserved repeat domain.
 
    0.855
ADY51007.1
Tetratricopeptide domain protein; COGs: COG4995 conserved hypothetical protein; InterPro IPR013026: IPR 019734; KEGG: phe:Phep_3307 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein.
 
  
 0.844
ADY51009.1
Hypothetical protein; InterPro IPR019775; KEGG: phe:Phep_3305 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.807
ADY53268.1
KEGG: phe:Phep_0401 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104).
  
     0.512
ADY53796.1
KEGG: chu:CHU_3705 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.461
ADY53924.1
KEGG: cat:CA2559_03115 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.459
thrS
Ser-tRNA(Thr) hydrolase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.438
ADY51792.1
KEGG: phe:Phep_2552 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.418
ADY53027.1
Hypothetical protein; KEGG: dfe:Dfer_2105 glycoside hydrolase family 9; SPTR: Putative uncharacterized protein.
  
     0.417
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.