STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY51087.1KEGG: sli:Slin_0557 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Alginate lyase. (396 aa)    
Predicted Functional Partners:
ADY51415.1
Glycoside hydrolase family 2 TIM barrel; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006101: IPR 006104: IPR 006102: IPR 006103; KEGG: phe:Phep_2700 beta-galactosidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; SPTR: Beta-galactosidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.
 
     0.454
ADY54151.1
Hypothetical protein; InterPro IPR006626; KEGG: rmr:Rmar_1165 poly(beta-D-mannuronate) lyase; SPTR: Putative uncharacterized protein.
     0.444
ADY53037.1
KEGG: phe:Phep_2650 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Heparinase II/III-like protein.
  
     0.442
ADY54336.1
KEGG: phe:Phep_0789 hypothetical protein; SPTR: Chondroitinase-B.
     0.426
ADY54157.1
Poly(beta-D-mannuronate) lyase; InterPro IPR006626; KEGG: rmr:Rmar_1165 poly(beta-D-mannuronate) lyase; PRIAM: Poly(beta-D-mannuronate) lyase; SPTR: Poly(Beta-D-mannuronate) lyase.
     0.425
ADY51766.1
InterPro IPR018152; KEGG: phe:Phep_0714 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein.
 
     0.422
ADY52056.1
KEGG: cpi:Cpin_0333 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.418
ADY54083.1
KEGG: phe:Phep_3357 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.416
ADY51305.1
Alginate lyase precursor; InterPro IPR006626; KEGG: pha:PSHAa1749 alginate lyase precursor; SPTR: Putative uncharacterized protein.
     0.409
ADY53033.1
KEGG: phe:Phep_2654 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Heparinase II/III-like protein.
  
     0.408
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.