STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY51208.1Hypothetical protein; InterPro IPR022272: IPR 006626; KEGG: sfr:Sfri_3103 poly(beta-D-mannuronate) lyase; SPTR: Alginate lyase. (449 aa)    
Predicted Functional Partners:
ADY51764.1
Heparinase II/III family protein; InterPro IPR012480; KEGG: sde:Sde_3284 hypothetical protein; PFAM: Heparinase II/III family protein; SPTR: Alginate lyase; PFAM: Heparinase II/III-like protein.
 
  
  0.885
ADY51204.1
TonB-dependent receptor plug; InterPro IPR012910; KEGG: cat:CA2559_11498 putative outer membrane protein; PFAM: TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
     0.815
ADY51207.1
TonB-dependent receptor; InterPro IPR006626; KEGG: sde:Sde_3285 TonB-dependent receptor; SPTR: Putative uncharacterized protein; TIGRFAM: parallel beta-helix repeat (two copies).
 
    
0.785
ADY51760.1
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sfr:Sfri_3106 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
 
    0.774
ADY51205.1
RagB/SusD domain protein; InterPro IPR012944; KEGG: dfe:Dfer_0773 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: SusD family.
 
     0.756
ADY51765.1
GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR000524: IPR 011711; KEGG: cat:CA2559_11478 transcriptional regulator, GntR family protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
     0.755
ADY51759.1
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR 002198: IPR 020904; KEGG: hba:Hbal_2769 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase.
 
     0.728
ADY51763.1
InterPro IPR013096; KEGG: phe:Phep_1026 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Putative pectin degradation protein; PFAM: Cupin domain.
 
     0.700
ADY54156.1
KEGG: phe:Phep_2692 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.663
ADY51206.1
KEGG: pyo:PY03832 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.518
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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