STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY51339.1Orn/DAP/Arg decarboxylase 2; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: phe:Phep_2320 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Arginine decarboxylase, biosynthetic; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain. (463 aa)    
Predicted Functional Partners:
ADY52480.1
Agmatine deiminase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: cpi:Cpin_3937 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; PRIAM: Agmatine deiminase; SPTR: Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
    
 0.925
argH
COGs: COG0165 Argininosuccinate lyase; InterPro IPR003031: IPR 000362: IPR 009049: IPR 020557; KEGG: phe:Phep_4202 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
     
 0.834
argS
COGs: COG0018 Arginyl-tRNA synthetase; InterPro IPR015945: IPR 001412: IPR 001278: IPR 005148: IPR 008909; KEGG: phe:Phep_2318 arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain protein; Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginine--tRNA ligase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.
 
     0.646
ADY52284.1
acyl-CoA reductase; InterPro IPR008670; KEGG: phe:Phep_3204 acyl-CoA reductase; PFAM: acyl-CoA reductase; SPTR: Putative uncharacterized protein; PFAM: Acyl-CoA reductase (LuxC).
  
   
 0.618
ADY53171.1
Homospermidine synthase (spermidine-specific); COGs: COG1899 Deoxyhypusine synthase; InterPro IPR002773; KEGG: phe:Phep_0287 deoxyhypusine synthase; PFAM: deoxyhypusine synthase; SPTR: Deoxyhypusine synthase; PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase.
 
     0.615
ADY53676.1
KEGG: phe:Phep_0180 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.480
ADY50748.1
KEGG: phe:Phep_3313 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Acyl-protein synthetase, LuxE.
  
     0.477
ADY54091.1
Arginase/agmatinase/formiminoglutamase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: phe:Phep_0263 arginase/agmatinase/formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Formiminoglutamase-related protein; PFAM: Arginase family; Belongs to the arginase family.
 
  
 0.468
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
    0.423
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.417
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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