STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY51403.1Pectate lyase/Amb allergen; COGs: COG3866 Pectate lyase; InterPro IPR002022: IPR 006626; KEGG: nde:NIDE2720 hypothetical protein; PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; Parallel beta-helix repeat; SPTR: Putative uncharacterized protein; PFAM: Pectate lyase. (574 aa)    
Predicted Functional Partners:
ADY51047.1
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR018040: IPR 000070; KEGG: phe:Phep_1157 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
  
 0.953
ADY53901.1
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR018040: IPR 000070; KEGG: fjo:Fjoh_4096 pectinesterase; PFAM: Pectinesterase; SPTR: Candidate pectin methylesterase; Carbohydrate esterase family 8; PFAM: Pectinesterase.
  
 0.946
ADY53893.1
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR018040: IPR 000070; KEGG: phe:Phep_1157 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
  
 0.943
ADY54240.1
KEGG: cse:Cseg_2736 hypothetical protein; SPTR: Oligogalacturonate lyase.
     
  0.900
ADY51404.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pca:Pcar_1522 putative glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase; PFAM: Glycosyl transferases group 1.
       0.776
ADY53098.1
Endo-1,4-beta-xylanase; InterPro IPR001137; KEGG: bha:BH0899 endo-1,4-beta-xylanhydrolase; PFAM: glycoside hydrolase family 11; PRIAM: Endo-1,4-beta-xylanase; SPTR: Endo-1,4-beta-xylanase; PFAM: Glycosyl hydrolases family 11; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.767
ADY53896.1
Pectate lyase; InterPro IPR006626; KEGG: cac:CA_P0056 pectate lyase; SPTR: Pectate lyase, secreted, polysaccharide lyase family.
 
     0.762
ADY53113.1
Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR005084: IPR 006710: IPR 006584; KEGG: zpr:ZPR_1030 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; PRIAM: Xylan 1,4-beta-xylosidase; SMART: cellulose binding type IV; SPTR: Possible endo-1,4-beta-xylanase; PFAM: Carbohydrate binding module (family 6); Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.621
ADY53114.1
Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR005084: IPR 006710: IPR 006584; KEGG: bvu:BVU_0032 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; PRIAM: Xylan 1,4-beta-xylosidase; SMART: cellulose binding type IV; SPTR: Possible endo-1,4-beta-xylanase; PFAM: Carbohydrate binding module (family 6); Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.619
ADY54256.1
InterPro IPR000209; KEGG: fjo:Fjoh_4222 FG-GAP repeat-containing protein; SPTR: Candidate rhamnogalacturonan lyase; Polysaccharide lyase family 11.
  
   
 0.608
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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