STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY51427.1Cupin 2 conserved barrel domain protein; InterPro IPR013096; KEGG: xac:XAC0171 rhamnogalacturonan acetylesterase; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Rhamnogalacturonan acetylesterase; PFAM: Cupin domain. (139 aa)    
Predicted Functional Partners:
ADY51428.1
Ankyrin; InterPro IPR002110: IPR 020683; KEGG: phe:Phep_3066 ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat.
       0.601
ADY51978.1
GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: lbf:LBF_2736 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family.
 
     0.520
ADY51214.1
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060: IPR 018062: IPR 013096: IPR 000005; KEGG: cpi:Cpin_3596 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
  
 
 0.484
ADY51245.1
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_5639 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold.
  
  
 0.464
ADY53903.1
InterPro IPR001087; KEGG: dfe:Dfer_1522 lipolytic protein G-D-S-L family; PFAM: lipolytic protein G-D-S-L family; SPTR: Lipolytic protein G-D-S-L family; PFAM: GDSL-like Lipase/Acylhydrolase.
 
      0.425
ADY51247.1
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR 013026: IPR 001440; KEGG: phe:Phep_0027 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein.
  
     0.420
ADY51391.1
COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: pdi:BDI_1837 glycosyltransferase; PFAM: sugar transferase; SPTR: Glycosyltransferase; PFAM: Bacterial sugar transferase.
  
  
 0.413
ADY51641.1
Undecaprenyl-phosphate galactose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: phe:Phep_1953 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Putative glycosyltransferase; PFAM: Bacterial sugar transferase.
  
  
 0.413
ADY51430.1
COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: phe:Phep_3064 outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: Gliding motility-related protein; possible outer membrane protein; PFAM: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: periplasmic chaperone LolA.
       0.412
ADY53892.1
Lipolytic protein G-D-S-L family; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_1242 lipolytic protein G-D-S-L family; PFAM: lipolytic protein G-D-S-L family; SPTR: Lipolytic protein G-D-S-L family; PFAM: GDSL-like Lipase/Acylhydrolase.
 
      0.403
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.