STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY51568.1Conserved hypothetical protein CHP00022; COGs: COG2731 Beta-galactosidase beta subunit; InterPro IPR004375; KEGG: cac:CA_C0836 putative beta-D-galactosidase; PFAM: Conserved hypothetical protein CHP00022; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF386); TIGRFAM: uncharacterized protein, YhcH/YjgK/YiaL family. (197 aa)    
Predicted Functional Partners:
ADY51567.1
Conserved hypothetical protein CHP00022; COGs: COG2731 Beta-galactosidase beta subunit; InterPro IPR004375; KEGG: plm:Plim_1197 hypothetical protein; PFAM: Conserved hypothetical protein CHP00022; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF386); TIGRFAM: uncharacterized protein, YhcH/YjgK/YiaL family.
 
    
0.787
ADY51569.1
COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: phe:Phep_1855 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase.
       0.461
ADY51570.1
TonB-dependent receptor; InterPro IPR012910: IPR 000531; KEGG: phe:Phep_1856 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain.
       0.445
ADY51566.1
InterPro IPR000182; KEGG: phe:Phep_0637 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Gnat family acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.418
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.