STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY52163.1KEGG: fjo:Fjoh_3022 hypothetical protein; SPTR: Putative uncharacterized protein. (486 aa)    
Predicted Functional Partners:
ADY52162.1
DNA topoisomerase III; COGs: COG0550 Topoisomerase IA; InterPro IPR000380: IPR 005738: IPR 006171: IPR 013497: IPR 018089: IPR 006154: IPR 003601: IPR 003602; KEGG: fjo:Fjoh_3021 DNA topoisomerase; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase III; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid.
 
 
 
 0.938
ADY52161.1
KilA-N, DNA-binding domain protein; InterPro IPR018873; KEGG: ddf:DEFDS_0289 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: Putative uncharacterized protein; PFAM: ORF6N domain.
 
     0.915
ADY52164.1
KEGG: fjo:Fjoh_3023 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.895
ADY52165.1
KEGG: bth:BT_0109 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.894
ADY52166.1
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: fjo:Fjoh_3024 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Regulatory protein RteC family protein; PFAM: RteC protein.
 
     0.818
ADY52150.1
COGs: COG4646 DNA methylase; InterPro IPR002296: IPR 003356: IPR 001650; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: N-6 DNA methylase; helicase domain protein; SMART: helicase domain protein; SPTR: Probable DNA methylase; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
   
 0.787
ADY52151.1
Domain of unknown function DUF1896; InterPro IPR015082; KEGG: bth:BT_2325 hypothetical protein; PFAM: Domain of unknown function DUF1896; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1896).
 
     0.785
ADY52113.1
KEGG: pgn:PGN_1282 conjugate transposon protein TraN; SPTR: Conjugate transposon TraN family protein; TIGRFAM: Bacteroides conjugative transposon TraN protein.
 
    0.781
ADY52114.1
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
 
     0.779
ADY52241.1
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
 
     0.779
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.