STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY52204.1Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: fjo:Fjoh_4473 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Regulatory protein RteC family protein; PFAM: RteC protein. (275 aa)    
Predicted Functional Partners:
ADY52205.1
KEGG: fjo:Fjoh_3102 methyltransferase type 11; SPTR: Methyltransferase type 11.
       0.668
ADY52165.1
KEGG: bth:BT_0109 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.654
ADY52429.1
KEGG: chu:CHU_1187 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.654
ADY54025.1
KEGG: cat:CA2559_11623 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.649
ADY52201.1
KEGG: fjo:Fjoh_3022 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.630
ADY52112.1
InterPro IPR018899; KEGG: bfr:BF1350 conjugate transposon protein TraO; PFAM: Conjugative transposon protein TraO; SPTR: Protein found in conjugate transposon TraO; PFAM: Conjugative transposon protein TraO.
  
     0.628
ADY52243.1
InterPro IPR018899; KEGG: bfr:BF1350 conjugate transposon protein TraO; PFAM: Conjugative transposon protein TraO; SPTR: Protein found in conjugate transposon TraO; PFAM: Conjugative transposon protein TraO.
  
     0.627
ADY52163.1
KEGG: fjo:Fjoh_3022 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.626
ADY52164.1
KEGG: fjo:Fjoh_3023 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.582
ADY52241.1
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
  
     0.570
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.