STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY52665.1Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: phe:Phep_1225 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease. (405 aa)    
Predicted Functional Partners:
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.964
ADY53569.1
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: phe:Phep_4154 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative lipoprotein releasing system transmembrane protein; manually curated; PFAM: Predicted permease.
  
  
 
0.929
ADY51430.1
COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: phe:Phep_3064 outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: Gliding motility-related protein; possible outer membrane protein; PFAM: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: periplasmic chaperone LolA.
 
 
 
 0.856
ADY51201.1
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR 017871: IPR 003593; KEGG: phe:Phep_2577 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
  
 
 0.805
ADY53955.1
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871: IPR 003593: IPR 003439; KEGG: phe:Phep_1447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
  
 
 0.805
ADY52508.1
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474: IPR 010827: IPR 000184; KEGG: phe:Phep_0986 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
   
 0.707
ADY52666.1
COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: dfe:Dfer_4819 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1343).
       0.674
ADY53847.1
Protein of unknown function DUF164; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: phe:Phep_0026 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: Putative uncharacterized protein; PFAM: Putative zinc ribbon domain.
  
     0.647
ADY52465.1
COGs: COG0539 Ribosomal protein S1; InterPro IPR000110: IPR 003029; KEGG: phe:Phep_1176 RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; SPTR: RNA binding S1 domain protein; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
 
     0.599
ADY53975.1
COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297: IPR 015391; KEGG: phe:Phep_0489 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain.
 
   
 0.588
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.