STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY52744.1Hypothetical protein; KEGG: bcc:BCc_146 YaeT; SPTR: Outer membrane protein. (85 aa)    
Predicted Functional Partners:
ADY52743.1
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR 013026: IPR 001440; KEGG: tet:TTHERM_00864990 TPR Domain containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_4.
       0.773
ADY52745.1
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR 001867; KEGG: cpi:Cpin_4882 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.558
ADY52746.1
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR 003594: IPR 005467; KEGG: cpi:Cpin_4883 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Two component sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
       0.558
ADY52747.1
Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917: IPR 012160; KEGG: phe:Phep_3537 sulfatase; PFAM: sulfatase; SPTR: Sulfatase; PFAM: Sulfatase.
       0.440
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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