STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY52796.1KEGG: phe:Phep_3464 hypothetical protein; SPTR: Lipoprotein, putative. (360 aa)    
Predicted Functional Partners:
ADY53534.1
COGs: COG0380 Trehalose-6-phosphate synthase; InterPro IPR001830: IPR 003337: IPR 006379; KEGG: cpi:Cpin_4022 trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose-phosphatase; SPTR: Trehalose-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase; Glycosyltransferase family 20; TIGRFAM: trehalose-phosphatase; alpha,alpha-trehalose-phosphate synthase [UDP-forming]; HAD-superfamily hydrolase, subfamily IIB.
   
    0.752
ADY51474.1
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: phe:Phep_1452 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase.
  
     0.742
ADY52795.1
COGs: COG1092 SAM-dependent methyltransferase; KEGG: phe:Phep_3463 SAM dependent methyltransferase; SPTR: SAM dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase.
       0.717
ADY50771.1
KEGG: fjo:Fjoh_4522 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.691
ADY53532.1
Glycosyl transferase family 51; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
 
   
 0.586
ADY52793.1
Protein of unknown function DUF140; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: phe:Phep_3461 protein of unknown function DUF140; PFAM: protein of unknown function DUF140; SPTR: ABC transporter, permease; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
       0.557
ADY52794.1
ABC transporter related protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR017871: IPR 003593: IPR 003439; KEGG: phe:Phep_3462 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter.
       0.557
ADY53075.1
KEGG: phe:Phep_0368 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: UbiA prenyltransferase family.
  
     0.510
ADY52797.1
Protein of unknown function DUF202; COGs: COG2149 membrane protein; InterPro IPR003807; KEGG: cpi:Cpin_6983 protein of unknown function DUF202; PFAM: protein of unknown function DUF202; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF.
       0.508
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
  
 0.450
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.